Publications

Acuña, Vicente, Andres Aravena, Carito Guziolowski, Damien Eveillard, Anne Siegel, and Alejandro Maass. 2016. “Deciphering transcriptional regulations coordinating the response to environmental changes.” BMC Bioinformatics 17 (1). BMC Bioinformatics: 35. doi:10.1186/s12859-016-0885-0.

Alvarez, Carolina, Andrés Aravena, Teresa Tapia, Ester Rozenblum, Luisa Solís, Alejandro Corvalán, Mauricio Camus, et al. 2016. “Different Array CGH profiles within hereditary breast cancer tumors associated to BRCA1 expression and overall survival.” BMC Cancer 16. BMC Cancer: 1–14. doi:10.1186/s12885-016-2261-x.

Cordero, Ninoska, Felipe Maza, Helen Navea-Perez, Andres Aravena, Bárbara Marquez-Fontt, Paola Navarrete, Guillermo Figueroa, Mauricio González, Mauricio Latorre, and Angélica Reyes-Jara. 2016. “Different Transcriptional Responses from Slow and Fast Growth Rate Strains of Listeria monocytogenes Adapted to Low Temperature.” Frontiers in Microbiology 7 (March): 1–9. doi:10.3389/fmicb.2016.00229.

Latorre, Mauricio, Nicole Ehrenfeld, María Paz Cortés, Dante Travisany, Marko Budinich, Andres Aravena, Mauricio González, Roberto A Bobadilla-Fazzini, Pilar Parada, and Alejandro Maass. 2016. “Global transcriptional responses of Acidithiobacillus ferrooxidans Wenelen under different sulfide minerals.” Bioresource Technology 200 (January): 29–34. doi:10.1016/j.biortech.2015.09.110.

Uçarlı, Cüneyt, Liam J. McGuffin, Süleyman Çaputlu, Andres Aravena, and Filiz Gürel. 2016. “Genetic diversity at the Dhn3 locus in Turkish Hordeum spontaneum populations with comparative structural analyses.” Scientific Reports 6 (November 2015): 20966. doi:10.1038/srep20966.

Acuña, Vicente, Andres Aravena, Alejandro Maass, and Anne Siegel. 2014. “Modeling Parsimonious Putative Regulatory Networks: Complexity and Heuristic Approach.” In Verification, Model Checking, and Abstract Interpretation: 15th International Conference, VMCAI 2014, San Diego, cA, USA, January 19-21, 2014, Proceedings, edited by Kenneth L. McMillan and Xavier Rival, 8318 LNCS:322–36. Berlin, Heidelberg: Springer Berlin Heidelberg. doi:10.1007/978-3-642-54013-4_18.

Muñoz, Claudia, Alex Di Genova, Alejandro Maass, Ariel Orellana, Patricio Hinrichsen, and Andres Aravena. 2014. “Vitis vinifera Genome Annotation Improvement Using Next-Generation Sequencing Technologies and NCBI Public Data.” Acta Horticulturae 1046: 349–56.

Di Génova, Alex, Andres Aravena, Luis Zapata, Mauricio González, Alejandro Maass, and Patricia Iturra. 2011. “SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss.” Database : The Journal of Biological Databases and Curation 2011 (0). Laboratory of Bioinformatics; Mathematics of the Genome, Center for Mathematical Modeling (UMI 2807 CNRS); Center for Genome Regulation (Fondap 15090007), University of Chile, Santiago, Chile.: bar050.

Hödar, Christian, Rodrigo Assar, Marcela Colombres, Andres Aravena, Leonardo Pavez, Mauricio González, Servet Martínez, Nibaldo C. Inestrosa, and Alejandro Maass. 2010. “Genome-wide identification of new Wnt/beta-catenin target genes in the human genome using CART method.” BMC Genomics 11 (1): 348. doi:10.1186/1471-2164-11-348.

Arrázola, Macarena S, Lorena Varela-Nallar, Marcela Colombres, Enrique M Toledo, Fernando Cruzat, Leonardo Pavez, Rodrigo Assar, et al. 2009. “Calcium/calmodulin-dependent protein kinase type IV is a target gene of the Wnt/beta-catenin signaling pathway.” Journal of Cellular Physiology 221 (3). Centro Basal de Excelencia para el Envejecimiento y Regeneración CARE, Centro de Regulación Celular y Patología Joaquín V Luco (CRCP); MIFAB, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.: 658–67. doi:10.1002/jcp.21902.

Colombo, Alicia, Marina Mione, Iskra Signore, Felipe Olivares, Ramón Pérez, Mauricio Gonzalez, Andres Aravena, Stephen Wilson, and Miguel Concha. 2009. “11-P008 Identification of genes with asymmetric expression in the zebrafish brain.” Mechanisms of Development 126 (August): S186. doi:10.1016/j.mod.2009.06.445.

Ehrenfeld, Nicole, Andres Aravena, Angelica Reyes-Jara, Marlene Barreto, Rodrigo Assar, Alejandro Maass, and P Parada. 2009. “Design and use of oligonucleotide microarrays for identification of biomining microorganisms.” Advanced Materials Research 71-73 (May): 155–58.