Andrés Octavio ARAVENA DUARTE

Applied Mathematician, Engineer, University Teacher, Researcher in Bioinformatics and Machine Learning
Assistant Professor, Molecular Biology and Genetics Department, Istanbul University

Nationality: Chilean
Contact Email: andres.aravena@gmail.com
Contact Phone: +90 (507) 013 31 84
Homepage: http://dry-lab.org/

Mathematical Engineer, University of Chile, Chile, 2002
PhD on Informatics, Inria-University Rennes I, France, 2013
PhD on Mathematical Modelling, University of Chile, 2013

Experience

2014-Present
Assistant Professor. Molecular Biology and Genetics Department, Istanbul University
2013-2014
Postdoctoral Researcher. “Center for Genome Regulation”, Center of Mathematical Modeling, Universidad de Chile-CNRS
2011-2013
PhD Thesist. Team Dyliss, IRISA/Inria, Université de Rennes 1, France
2011-2013
PhD Thesist. “Center for Genome Regulation”, Center of Mathematical Modeling, Universidad de Chile-CNRS
2009-2011
Bioinformatics Researcher on Salmon Nutriogenomics. Project “Salmonid genomics: identification of genes related to protein and vegetal oil usage in Atlantic salmon and rainbow trout nutrition”.
2008-2012
Bioinformatics Researcher on Grape Genomics. INIA, Chilean National Agriculture Research Institute
2010
Statistical analyst in Breast Cancer Research. Project “Molecular profile of breast cancer at clinical stages II and III in Latin-American women receiving a standard reference treatment”.
2007-2011
Co-research in the modeling copper homeostasis in E.faecalis. Funded by Fondecyt N17071083, National Fund for Science and Technology
2007-2008
Project manager. Project “Bioidentification system for industry-relevant microorganisms: application to avian and winery sectors”.
2003-2010
Chief Research Engineer. Laboratory of Bioinformatics and Mathematics of Genome, Center for Mathematical Modeling, Universidad de Chile-CNRS
2002
Chief Engineer. Network and Computing Services, Center for Mathematical Modeling, Universidad de Chile
1996-2001
Chief Engineer. Network and Computing Services, Universidad Arturo Prat, Chile

Publications (last 5 years)

Acuña, V., Aravena, A., Guziolowski, C., et al. (2016). Deciphering transcriptional regulations coordinating the response to environmental changes. BMC Bioinformatics 17, 35.

Alvarez, C., Aravena, A., Tapia, T., et al. (2016). Different Array CGH profiles within hereditary breast cancer tumors associated to BRCA1 expression and overall survival. BMC Cancer 16, 1–14.

Cordero, N., Maza, F., Navea-Perez, H., et al. (2016). Different Transcriptional Responses from Slow and Fast Growth Rate Strains of Listeria monocytogenes Adapted to Low Temperature. Frontiers in Microbiology 7, 1–9.

Latorre, M., Ehrenfeld, N., Cortés, M.P., et al. (2016). Global transcriptional responses of Acidithiobacillus ferrooxidans Wenelen under different sulfide minerals. Bioresource Technology 200, 29–34.

Uçarlı, C., McGuffin, L.J., Çaputlu, S., et al. (2016). Genetic diversity at the Dhn3 locus in Turkish Hordeum spontaneum populations with comparative structural analyses. Scientific Reports 6, 20966.

Patents

Further References

Languages

Spanish (native), English (spoken, written), French (spoken, written), Italian (basic), Portuguese (basic), Turkish (basic).